Package: RTIGER 2.1.0
RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification
Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>.
Authors:
RTIGER_2.1.0.tar.gz
RTIGER_2.1.0.zip(r-4.5)RTIGER_2.1.0.zip(r-4.4)RTIGER_2.1.0.zip(r-4.3)
RTIGER_2.1.0.tgz(r-4.4-any)RTIGER_2.1.0.tgz(r-4.3-any)
RTIGER_2.1.0.tar.gz(r-4.5-noble)RTIGER_2.1.0.tar.gz(r-4.4-noble)
RTIGER_2.1.0.tgz(r-4.4-emscripten)RTIGER_2.1.0.tgz(r-4.3-emscripten)
RTIGER.pdf |RTIGER.html✨
RTIGER/json (API)
| # Install 'RTIGER' in R: |
| install.packages('RTIGER', repos = c('https://rfael0cm.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rfael0cm/rtiger/issues
- ATseqlengths - The autosome chromosome lengths for Arabidopsis Thaliana.
- myDat - A fitted example using three own samples of Arabidopsis. More information in publication:
genomeannotationhiddenmarkovmodelsequencing
Last updated 1 years agofrom:c187e84113. Checks:OK: 1 ERROR: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 25 2024 |
| R-4.5-win | ERROR | Oct 25 2024 |
| R-4.5-linux | ERROR | Oct 25 2024 |
| R-4.4-win | ERROR | Oct 25 2024 |
| R-4.4-mac | ERROR | Oct 25 2024 |
| R-4.3-win | ERROR | Oct 25 2024 |
| R-4.3-mac | ERROR | Oct 25 2024 |
Exports:calcCOnumberdevfitgenerateObjectoptimize_RplotCOsRTIGERsetupJuliasourceJulia
Dependencies:askpassBiobaseBiocGenericsclasscliclustercolorspacecurle1071evaluateextraDistrfansifarverGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhttrIRangesisobandjsonliteJuliaCallknitrlabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeoompaBaseoompaDataopensslpillarpkgconfigplyrproxyqpdfR6RColorBrewerRcppreshape2rjsonrlangS4VectorsscalesstringistringrsysTailRanktibbleUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc
