Package: RTIGER 2.1.0

RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification

Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>.

Authors:Rafael Campos-Martin [cre], Sophia Schmickler [aut], Manish Goel [ctb], Korbinian Schneeberger [aut], Achim Tresch [aut]

RTIGER_2.1.0.tar.gz
RTIGER_2.1.0.zip(r-4.5)RTIGER_2.1.0.zip(r-4.4)RTIGER_2.1.0.zip(r-4.3)
RTIGER_2.1.0.tgz(r-4.4-any)RTIGER_2.1.0.tgz(r-4.3-any)
RTIGER_2.1.0.tar.gz(r-4.5-noble)RTIGER_2.1.0.tar.gz(r-4.4-noble)
RTIGER_2.1.0.tgz(r-4.4-emscripten)RTIGER_2.1.0.tgz(r-4.3-emscripten)
RTIGER.pdf |RTIGER.html✨
RTIGER/json (API)

Peer review:

Bug tracker:https://github.com/rfael0cm/rtiger/issues

On CRAN:

9 exports 3 stars 1.18 score 66 dependencies 5 scripts 246 downloads

Last updated 11 months agofrom:c187e84113. Checks:OK: 1 ERROR: 6. Indexed: yes.

Exports:calcCOnumberdevfitgenerateObjectoptimize_RplotCOsRTIGERsetupJuliasourceJulia

Dependencies:askpassBiobaseBiocGenericsclasscliclustercolorspacecurle1071evaluateextraDistrfansifarverGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhttrIRangesisobandjsonliteJuliaCallknitrlabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeoompaBaseoompaDataopensslpillarpkgconfigplyrproxyqpdfR6RColorBrewerRcppreshape2rjsonrlangS4VectorsscalesstringistringrsysTailRanktibbleUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc